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We always have more workshops in development. Contact us and let us know what you’re interested in learning about!
Prior BRC Workshops and Events
DNASTAR Lasergene Workshop and Consultation Sessions
Workshop: Mossman 212, Jan 29th @3:30pm – 5:30pm
Consultation sessions: SERF 736, Jan 30th @9:30am – 12:00pm
On Thursday, Jan. 29th, 3:30pm – ~5:00pm in 212 Mossman, Thomas Leary, bioinformaticist from DNASTAR, reviewed the Genomics (next-gen) and Molecular Biology modules of Lasergene.
On January 30th from 9:30 AM-12:00 PM, Thomas Leary participated in small group consultations for researchers.
UT BRC Workshop: Microbial Genomes Atlas (MiGA) Web-server and Metagenome-Annotated Genomes (MAGs)
Thursday, Oct. 4th, 1pm – 5pm
KBase RNA-seq Workshop
May 9th, 2018
The BRC hosted Priya Ranjan, Ben Allen, and Meghan Drake from the KBase team for an RNA-seq workshop May 9th, 2018.
Prokaryotic data was used for the hands-on tutorials; however, the tools and skills to be covered are also applicable to plant projects.
KBase can be used for a variety of applications such as transcriptome assembly, gene discovery/annotation, and detection of differential transcript abundances between tissues, developmental stages, genetic backgrounds and environmental conditions. The RNA-seq pipeline inKBase allows researchers to create differential expression estimates and use these to perform functional analysis of genes with similar expression patterns and inform metabolic models.
March 15-16, 2018
The UT Bioinformatics Resource Center was pleased to welcome Dr. Will Trimble from the MG-RAST team at Argonne National Laboratory for a 1-and-a-half day workshop on MG-RAST. The workshop included seminars and extensive hands-on tutorials from Robert W. Murdoch and Will Trimble on how to use the MG-RAST graphical user-interface (GUI) and advanced programing interfaces (API) of MG-RAST and NCBI.
The curriculum, walkthroughs, and links to additional tutorials can be found here: https://github.com/wltrimbl/UTK-MGRAST
Integrated Microbial Genomes Workshop
January 8-9th, 2018
The UT Bioinformatics Resource Center was pleased to welcome Natalia Ivanova and Rekha Seshadri from The U.S. Department of Energy Joint Genome Institute (DoE JGI) for a 2-day workshop on Microbial Genomics and Metagenomics (IMG). The workshop included seminars and extensive hands-on tutorials on how to use the IMG interface for comparative analysis of isolate genomes and metagenomes. DoE JGI science and technology was also be highlighted.
The Integrated Microbial Genomes (IMG) system is a comprehensive repository of annotated sequence data of archaeal, bacterial and viral genomes and metagenomes from cultured and uncultured organisms. Researchers who wish to learn to explore the data and leverage tools for comparison and gene discovery should attend this workshop.
CLC Genomics Workbench:
Consultation Sessions and Transcriptomics (RNAseq) Workshop
December 13th, 2017
The UT Bioinformatics Resource Center was pleased to host Shawn Prince from the Qiagen CLC Genomics Workbench team! Shawn was be on hand for small group consulting sessions and will led a transcriptomics (RNA-seq) workshop.
KBase Introductory Workshop
December 1, 2017
The BRC was pleased to welcome the Department of Energy Systems Biology Knowledgebase (KBase) team! KBase is a free, open source software and data platform designed for both bench biologists and bioinformaticians. KBase integrates a large variety of public data and tools into an easy-to-use graphical user interface.
KBase enables users to upload their own data, analyze it alongside collaborator and public data, build increasingly realistic models, and share their workflows and conclusions. Users do not need to access them from numerous sources or learn multiple systems in order to perform sophisticated systems biology analyses.
The workshop covered a variety of analyses for microbes and microbial communities, including a rich collection of bioinformatics tools for quality control and assessment of reads, de novo assembly, prokaryotic genome annotation, and how to analyze structural and functional features of genomes within KBase.
8th Argonne Soil Metegenomics Meeting
November 1-3, 2017
BRC Coordinator Robert Murdoch attended the soil metagenomics meeting at Argonne National Laboratory, the home of MG-RAST. Among the most important topics discussed were the current state of 16S amplicon library analysis pipelines and recent improvements to MG-RAST.
CLC Genomics Workbench Workshop: 16S library pipelines and office hours
October 24, 2017
An expert from the CLC Genomics Workbench team led a focused workshop on 16S library analysis pipelines. Also, the expert was hand throughout the day in SERF 736 for smaller consultation sessions.
JGI IMG Workshop in Walnut Creek, CA
BRC Coordinator Robert Murdoch attended the weeklong IMG workshop at JGI headquarters in Walnut Creek, CA. Dr. Murdoch will be happy to assist you with the IMG platform.
CLC Genomics Workbench workshop
The CEB BRC welcomed CLC team members in the summer of 2017 for a day-long introductory CLC Genomics Workbench workshop. The workshop demonstrated many aspects of the software package. With almost 80 attendees, this was the largest workshop that the CLC team had ever been involved in.
In light of attendee feedback, additional specialized workshops will follow in the year to come!