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2021 Publications

  1. Abramov A, Vishnivetskaya T, Rivkina E. 2021. Are permafrost microorganisms as old as permafrost? FEMS Microbiology Ecology 97:fiaa260.
  2. Ash KT, Alamilla I, Li Y, Joyner DC, Williams DE, McKay PJ, Green BM, Iler C, DeBlander SE, Kara-Murdoch F, Swift CM, Hazen TC. 2021. Coding-complete genome sequence of a SARS-CoV-2 variant obtained from raw sewage at the University of Tennessee-Knoxville campus. Microbiology Resource Announcements 10:e01049-21.
  3. Bernard RF, Willcox EV, Jackson RT, Brown VA, McCracken GF. 2021.  Feasting, not fasting: winter diets of cave hibernating bats in the United States. Frontiers in Zoology 18:48.
  4. Boles BW, Murdoch RW, Ohlsson I, Mikucki JA. 2021. Draft genome sequence of Shewanella sp. strain BF02_Schw, isolated from Blood Falls, a feature where subglacial brine discharges to the surface of Taylor Glacier, Antarctica. Microbiology Resource Announcements 10:e01141-20.
  5. Catarino AI, Kramm J, Volker C, Henry TB, Everaert G. 2021. Risk posed by microplastics: Scientific evidence and public perception. Current Opinion in Green and Sustainable Chemistry 29:e100467.
  6. Chen J, Yang L, Chen X, Ripp S, Radosevich M, Zhuang J. 2021. Bacterial mobility facilitated by soil depth and intact structure. Soil and Tillage Research 209:104911.
  7. Choi M, Yun T, Song MJ, Kim J, Lee B-H, Löffler FE, Yoon S. 2021. Cometabolic vinyl chloride degradation at acidic pH catalyzed by acidophilic methanotrophs isolated from alpine peat bogs. Environmental Science & Technology doi:10.1021/acs.est.0c08766.
  8. Dai X, Wang Y, Luo L, Pfiffner SM, Li G, Dong Z, Xu Z, Dong H, Huang L. 2021. Detection of the deep biosphere in metamorphic rocks from the Chinese continental scientific drilling. Geobiology doi: 10.1111/gbi.12430.
  9. Din G, Hassan A, Dunlap J, Ripp S, Hasan F, Shah AA. 2021. Cadmium tolerance and bioremediation potential of filamentous fungus Penicillium chrysogenum FMS2 isolated from soil. International Journal of Environmental Science and Technology 10.1007/s13762-021-03211-7.
  10. Frewein MPK, Doktorova M, Heberle FA, Scott HL, Semeraro EF, Porcar L, Pabst G. 2021. Structure and interdigitation of chain-asymmetric phosphatidylcholines and milk sphingomyelin in the fluid phase. Symmetry-Basel 13:e1441.
  11. Goñez-Rodríguez L, Johs A, Lowe KA, Carter KE, Löffler FE, Mayes MA. 2021. Evaluation of engineered sorbents for the sorption of mercury from contaminated bank soils: A column study. Environmental Science and Pollution Research 10.1007/s11356-020-12073-4.
  12. Holmfeldt K, Nilsson E, Simone D, Lopez-Fernandez M, Wu XF, de Bruijn I, Lundin D, Andersson AF, Bertilsson S, Dopson M. 2021. The Fennoscandian Shield deep terrestrial virosphere suggests slow motion ‘boom and burst’ cycles. Communications Biology 4:e307.
  13. Karthikeyan S, Orellana LH, Johnston ER, Hatt JK, Löffler FE, Ayala-del-Río HL, González G, Konstantinidis KT. 2021. Metagenomic characterization of soil microbial communities in the Luquillo experimental forest (Puerto Rico) and implications for nitrogen cycling. Applied and Environmental Microbiology doi:10.1128/aem.00546-21:AEM.00546-21.
  14. Liang RX, Li Z, Vetter M, Vishnivetskaya TA, Zanina OG, Lloyd KG, Pfiffner SM, Rivkina EM, Wang W, Wiggins J, Miller J, Hettich RL, Onstott TC. 2021. Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost. Microbiome 9:e110.
  15. Liang XL, Wang YS, Zhang Y, Zhuang J, Radosevich M. 2021. Viral abundance, community structure and correlation with bacterial community in soils of different cover plants. Applied Soil Ecology 168:e104138.
  16. Marsh WS, Heise BW, Krzmarzick MJ, Murdoch RW, Fathepure BZ. 2021. Isolation and characterization of a halophilic Modicisalibacter sp. strain Wilcox from produced water. Scientific Reports 11:e6943.
  17. McLendon RC, Scott HL, Kennison K, Baker JR, Heberle FA, Waxham N, Frederick A. 2021. A new standard for membrane structure? Investigating factors that influence measured bilayer thickness in cryo-EM images. Biophysical Journal 120:146A.
  18. Mendrik FM, Henry TB, Burdett H, Hackney CR, Waller C, Parsons DR, Hennige SJ. 2021. Species-specific impact of microplastics on coral physiology. Environmental Pollution 269.
  19. Meyers A. Phoma violacea defacement of White House columns. Inoculum, The Mycological Society of America, in press.
  20. Millet LJ, Giannone RJ, Greenwood MS, Foster CM, O’Neil KM, Braatz AD, Davern SM. 2021. Identifying candidate biomarkers of ionizing radiation in human pulmonary microvascular lumens using microfluidics – A pilot study. Micromachines 12:904.
  21. Noubissi FK, McBride AA, Leppert HG, Millet LJ, Wang X, Davern SM. 2021. Detection and quantification of γ-H2AX using a dissociation enhanced lanthanide fluorescence immunoassay. Scientific Reports 11:8945.
  22. Paradis CJ, Miller JI, Moon JW, Spencer SJ, Lui LM, Van Nostrand JD, Ning DL, Steen AD, McKay LD, Arkin AP, Zhou JZ, Alm EJ, Hazen TC. Sustained ability of a natural microbial community to remove nitrate from groundwater. Groundwater doi:10.1111/gwat.13132, in press.
  23. Sanford RA, Lloyd KG, Konstantinidis KT, Loffler FE. 2021. Microbial taxonomy run amok. Trends in Microbiology 29:394-404.
  24. Semeraro EF, Marx L, Mandl J, Frewein MPK, Scott HL, Prevost S, Bergler H, Lohner K, Pabst G. 2021. Evolution of the analytical scattering model of live Escherichia coli. Journal of Applied Crystallography 54:473-485.
  25. Shan J, Sanford RA, Chee-Sanford J, Ooi SK, Loffler FE, Konstantinidis KT, Yang WH. 2021. Beyond denitrification: The role of microbial diversity in controlling nitrous oxide reduction and soil nitrous oxide emissions. Global Change Biology doi:10.1111/gcb.15545.
  26. Shmakova L, Malavin S, Iakovenko N, Vishnivetskaya T, Shain D, Plewka M, Rivkina E. 2021. A living bdelloid rotifer from 24,000-year-old Arctic permafrost. Current Biology 31:R712-R713.
  27. Shobnam N, Sun YC, Mahmood M, Loffler FE, Im J. 2021. Biologically mediated abiotic degradation (BMAD) of bisphenol A by manganese-oxidizing bacteria. Journal of Hazardous Materials 417.
  28. Sipes K, Almatari A, Eddie A, Williams D, Spirina E, Rivkina E, Liang RX, Onstott TC, Vishnivetskaya TA, Lloyd KG. 2021. Eight metagenome-assembled genomes provide evidence for microbial adaptation in 20,000-to 1,000,000-year-old Siberian permafrost. Applied and Environmental Microbiology 87:e00972-21.
  29. St Mary L, Trine LSD, Roper C, Wiley J, Simonich SLM, McCoustra M, Henry TB. 2021. Time-related alteration of aqueous-phase anthracene and phenanthrene photoproducts in the presence of TiO2 nanoparticles. Environmental Science & Technology 55:3727-3735.
  30. Sun YC, Im J, Shobnam N, Fanourakis SK, He LL, Anovitz LM, Erickson PR, Sun HH, Zhuang J, Loffler FE. 2021. Degradation of adsorbed bisphenol A by soluble Mn(III). Environmental Science & Technology 55:13014-13023.
  31. Wienhold M, Kirkpatrick A, Xu T, Ripp S, Sayler G, Close D. 2021. Improvements in smartphone and night vision imaging technologies enable low cost, on-site assays of bioluminescent cells. Frontiers in Bioengineering & Biotechnology – Biomaterials 9:e1150.
  32. Wu XF, Chauhan A, Layton AC, Vetter M, Stackhouse BT, Williams DE, Whyte L, Pfiffner SM, Onstott TC, Vishnivetskaya TA. 2021. Comparative metagenomics of the active layer and permafrost from low-carbon soil in the Canadian High Arctic. Environmental Science & Technology 55:12683-12693.
  33. Xu T, Gilliam M, Sayler G, Ripp S, Close D. 2021. Screening for androgen agonists using autonomously bioluminescent HEK293 reporter cells. Biotechniques 71:10.2144/btn-2021-0017.
  34. Yan J, Wang J, Villalobos Solis MI, Jin H, Chourey K, Li X, Yang Y, Yin Y, Hettich RL, Löffler FE. 2021. Respiratory vinyl chloride reductive dechlorination to ethene in tceA-expressing Dehalococcoides mccartyi. Environmental Science & Technology doi:10.1021/acs.est.0c07354.
  35. Yang Y, Huo LT, Li XY, Yan J, Loffler FE. 2021. Complete genome sequence of Sulfurospirillum sp. strain ACSDCE, an anaerobic bacterium that respires tetrachloroethene under acidic pH conditions. Microbiology Resource Announcements 10.
  36. Yang L, Kang J, Chen X, Ripp S, Zhuang J. 2021. Real-time bioluminescent imaging of spatiotemporal variation of microbial retention during transport through porous media under variably saturated flow conditions. Journal of Hydrology 601:126603.
  37. Yu F, Munoz B, Bienkowski PR, Sayler GS. 2021. Continuous trichloroethylene biodegradation by Pseudomonas putida F1 in a biofilm reactor and determination of an optimal feeding path via a response surface model. Engineering Reports 3:e12385.
  38. Zanina OG, Lopatina DA, Ovsepyan YS, Kuzmina SA, Stepanova AY, Taldenkova EE, Vishnivetskaya TA, Rivkina EM. Environmental evolution of Cape Maly Chukochy (Kolyma Lowland) in the middle–late Neopleistocene: Micropaleontological evidence. Stratigraphy and Geological Correlation 29:722-741.
  39. Zhuang J, Loffler F, Sayler G. 2021. Closing transdisciplinary collaboration gaps of food-energy-water nexus research. Environmental Science & Policy 126:164-167.
  40. Zhuang J, Löffler F, Sayler G, Yu G, Jiang G. 2021. Solving shared problems at the food, energy, and water nexus. EOS, Transactions American Geophysical Union 102,
  41. Zhuang J, Sun HH, Sayler G, Kline KL, Dale VH, Jin MZ, Yu GR, Fu BJ, Loffler FE. 2021. Food-Energy-Water crises in the United States and China: Commonalities and asynchronous experiences support integration of global efforts. Environmental Science & Technology 55:1446-1455.