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2019 Publications

  1. Akondi RN, Sharma S, Trexler RV, Mouser PJ, Pfiffner SM. 2019. Microbial lipid biomarkers detected in deep subsurface black shales. Environmental Science-Processes & Impacts 21:291-307.
  2. Booker A, Hoyt D, Meulia T, Eder E, Nicora C, Purvine S, Daly R, Moore J, Wunch K, Pfiffner S, Lipton M, Mouser PJ, Wrighton KC, Wilkins MJ. 2019. Deep subsurface pressure stimulates metabolic plasticity in shale-colonizing Halanaerobium spp. Applied and Environmental Microbiology 85:e00018-19.
  3. Braun de Torrez EC, Brown VA, McCracken GF, Kunz TH. 2019. Sympatric bat species prey opportunistically on a major moth pest of pecans. Sustainability 11:6365.
  4. Catarino AI, Frutos A, Henry TB. 2019. Use of fluorescent-labelled nanoplastics (NPs) to demonstrate NP absorption is inconclusive without adequate controls. Science of the Total Environment 670:915-920.
  5. Conway M, Brumbaugh A, Xu T, Young A, Close D, Ripp S. Overview of in vivo imaging methods and instrumentation. In Barroso MM, Intes X (ed.), Imaging from cells to animals in vivo. Taylor & Francis Books, Inc., in press.
  6. Davern S, O’Neil D, Hallikainen H, O’Neil K, Allman S, Millet L, Retterer S, Doktycz M, Standaert R, Boll R, Van Cleve S, DePaoli D, Mirzadeh S. 2019. Microfluidics-based separation of actinium-225 from radium-225 for medical applications. Separation Science and Technology 54:1994-2002.
  7. Din G, Hasan F, Conway M, Denney B, Ripp S, Shah AA. 2019. Engineering a bioluminescent bioreporter from an environmentally-sourced mercury-resistant Enterobacter cloacae strain for the detection of bioavailable mercury. Journal of Applied Microbiology 127:1125-1134.
  8. Kaya D, Kjellerup BV, Chourey K, Hettich RL, Taggart DM, Löffler FE. 2019. Impact of fixed nitrogen availability on Dehalococcoides mccartyi reductive dechlorination activity. Environmental Science & Technology 10.1021/acs.est.9b04463.
  9. Kirkpatrick A, Xu T, Ripp S, Sayler G, Close D. 2019. Biotechnological advances in luciferase enzymes. In Suzuki H (ed.), Bioluminescence-Analytical Applications and Basic Biology 10.5772/intechopen.85313. IntechOpen, London, UK.
  10. Kleindienst S, Chourey K, Chen G, Murdoch RW, Higgins SA, Iyer R, Campagna SR, Mack EE, Seger ES, Hettich RL, Löffler FE. 2019. Proteogenomics reveals novel reductive dehalogenases and methyltransferases expressed during anaerobic dichloromethane metabolism. Applied and Environmental Microbiology 85:e02768-18.
  11. Kraev G, Rivkina E, Vishnivetskaya T, Belonosov A, van Huissteden J, Kholodov A, Smirnov A, Kudryavtsev A, Teshebaeva K, Zamolodchikov D. 2019. Methane in gas shows from boreholes in epigenetic permafrost of Siberian Arctic. Geosciences 9.
  12. Liang R, Lau M, Vishnivetskaya T, Lloyd KG, Wang W, Wiggins J, Miller J, Pfiffner S, Rivkina EM, Onstott T. 2019. Predominance of anaerobic, spore-forming bacteria in metabolically active microbial communities from ancient Siberian permafrost. Applied and Environmental Microbiology 10.1128/aem.00560-19:AEM.00560-19.
  13. Liang X, Radosevich M, Löffler F, Schaeffer SM, Zhuang J. 2019. Impact of microbial iron oxide reduction on the transport of diffusible tracers and non-diffusible nanoparticles in soils. Chemosphere 220:391-402.
  14. Manoharan L, Kozlowski JA, Murdoch RW, Löffler FE, Sousa FL, Schleper C. 2019. Metagenomes from coastal marine sediments give insights into the ecological role and cellular features of Loki– and Thorarchaeota. mBio 10:e02039-19.
  15. Olivatto GP, Martins MCT, Montagner CC, Henry TB, Carreira RS. 2019. Microplastic contamination in surface waters in Guanabara Bay, Rio de Janeiro, Brazil. Marine Pollution Bulletin 139:157-162.
  16. Patabadige DEW, Millet LJ, Aufrecht JA, Shankles PG, Standaert RF, Retterer ST, Doktycz MJ. 2019. Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous interfaces. Scientific Reports 9.
  17. Patsiou D, Kalman J, Fernandes TF, Henry TB. 2019. Differences in engineered nanoparticle surface physicochemistry revealed by investigation of changes in copper bioavailability during sorption to nanoparticles in the aqueous phase. Environmental Toxicology and Chemistry 38:925-935.
  18. Rodriguez-Perez A, James M, Donnan DW, Henry TB, Moller LF, Sanderson WG. 2019. Conservation and restoration of a keystone species: Understanding the settlement preferences of the European oyster (Ostrea edulis). Marine Pollution Bulletin 138:312-321.
  19. Vannuci-Silva M, Cadore S, Henry TB, Umbuzeiro G. 2019. Higher silver bioavailability after nanoparticle dietary exposure in marine amphipods. Environmental Toxicology and Chemistry 38:806-810.
  20. Wu L, Ning D, Zhang B, Li Y, Zhang P, Shan X, Zhang Q, Brown M, Li Z, Van Nostrand JD, Ling F, Xiao N, Zhang Y, Vierheilig J, Wells GF, Yang Y, Deng Y, Tu Q, Wang A, Acevedo D, Agullo-Barcelo M, Alvarez PJJ, Alvarez-Cohen L, Andersen GL, de Araujo JC, Boehnke K, Bond P, Bott CB, Bovio P, Brewster RK, Bux F, Cabezas A, Cabrol L, Chen S, Criddle CS, Deng Y, Etchebehere C, Ford A, Frigon D, Gómez JS, Griffin JS, Gu AZ, Habagil M, Hale L, Hardeman SD, Harmon M, Horn H, Hu Z, Jauffur S, Johnson DR, Keller J, Keucken A, Kumari S, Leal CD, Lebrun LA, Lee J, Lee M, Lee ZMP, Li Y, Li Z, Li M, Li X, Ling F, Liu Y, Luthy RG, Mendonça-Hagler LC, de Menezes FGR, Meyers AJ, Mohebbi A, Nielsen PH, Ning D, Oehmen A, Palmer A, Parameswaran P, Park J, Patsch D, Reginatto V, de los Reyes FL, Rittmann BE, Robles AN, Rossetti S, Shan X, Sidhu J, Sloan WT, Smith K, de Sousa OV, Stahl DA, Stephens K, Tian R, Tiedje JM, Tooker NB, Tu Q, Van Nostrand JD, De los Cobos Vasconcelos D, Vierheilig J, Wagner M, Wakelin S, Wang A, Wang B, Weaver JE, Wells GF, West S, Wilmes P, Woo S-G, Wu L, Wu J-H, Wu L, Xi C, Xiao N, Xu M, Yan T, Yang Y, Yang M, Young M, Yue H, Zhang B, Zhang P, Zhang Q, Zhang Y, Zhang T, Zhang Q, Zhang W, Zhang Y, Zhou H, Zhou J, Wen X, Curtis TP, He Q, He Z, Brown M, Zhang T, He Z, Keller J, Nielsen PH, Alvarez PJJ, Criddle CS, Wagner M, Tiedje JM, He Q, Curtis TP, Stahl DA, Alvarez-Cohen L, Rittmann BE, Wen X, Zhou J, Global Water Microbiome Consortium. 2019. Global diversity and biogeography of bacterial communities in wastewater treatment plants. Nature Microbiology 10.1038/s41564-019-0426-5.
  21. Xu T, Close D, Din G, Sayler G, Ripp S. 2019. Engineering autobioluminescent eukaryotic cells as tools for environmental and biomedical surveillance. In Belkin S, Freemont P (ed.), Handbook of Cell Biosensors. Springer Publishing, New York, NY.
  22. Xu T, Kirkpatrick A, Toperzer J, Ripp S, Close D. 2019. Improving estrogenic compound screening efficiency by using self-modulating, continuously bioluminescent human cell bioreporters expressing a synthetic luciferase. Toxicological Sciences 168:551-560.
  23. Xu T, Young A, Narula J, Sayler G, Ripp S. High-throughput analysis of endocrine disrupting compounds using BLYES and BLYAS bioluminescent yeast bioassays In Ripp S (ed.), Methods in Molecular Biology – Bioluminescent Imaging. Springer Nature, Basingstoke, UK, in press.
  24. Yanac K, Murdoch RW. 2019. Biotransformation of the fluorinated nonsteroidal anti-inflammatory pharmaceutical flurbiprofen in activated sludge results in accumulation of a recalcitrant fluorinated aromatic metabolite. Global Challenges 3. 10.1002/gch2.201800093.
  25. Yang L, Chen X, Zeng XF, Radosevich M, Ripp S, Zhuang J, Sayler G. Surface-adsorbed contaminants mediate the importance of chemotaxis and haptotaxis for bacterial transport through soils. Frontiers in Microbiology, in press.
  26. Yin Y, Yan J, Chen G, Murdoch FK, Pfisterer N, Löffler FE. 2019. Nitrous oxide is a potent inhibitor of bacterial reductive dechlorination. Environmental Science & Technology 53:692-701.
  27. Yip D, Kirkpatrick A, Xu T, Masi T, Stephenson S, Ripp S, Close D. Continuous and real-time in vivo autobioluminescent imaging in a mouse model. In Ripp S (ed.), Methods in Molecular Biology – Bioluminescent Imaging. Springer, Nature, Basingstoke, UK, in press.