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2016 Publications

  1. Al-Bairuty GA, Boyle D, Henry TB, Handy RD. 2016. Sublethal effects of copper sulphate compared to copper nanoparticles in rainbow trout (Oncorhynchus mykiss) at low pH: physiology and metal accumulation. Aquatic Toxicology 174:188-198.
  2. Boran H, Boyle D, Altinok I, Patsiou D, Henry TB. 2016. Aqueous Hg2+ associates with TiO2 nanoparticles according to particle size, changes particle agglomeration, and becomes less bioavailable to zebrafish. Aquatic Toxicology 174:242-246.
  3. Buongiorno J, Bird JT, Krivushin K, Oshurkova V, Shcherbakova V, Rivkina EM, Lloyd KG, Vishnivetskaya TA. 2016. Draft genome sequence of Antarctic methanogen enriched from dry valley permafrost. Genome Announcements 4:e01362-16.
  4. Cheng MD, Allman SL, Graham DE, Cheng KR, Pfiffner SM, Vishnivetskaya TA, Desjarlais AO. 2016. Surface reflectance degradation by microbial communities. Journal of Building Physics 40:263-277.
  5. Cusick KD, Wilhelm SW, Hargraves PE, Sayler GS. 2016. Single-cell PCR of the luciferase conserved catalytic domain reveals a unique cluster in the toxic bioluminescent dinoflagellate Pyrodinium bahamense. Aquatic Biology 25:139-150.
  6. Hazen TC, Prince RC, Mahmoudi N. 2016. Marine oil biodegradation. Environmental Science & Technology 50:2121-2129.
  7. Higgins SA, Welsh A, Orellana LH, Konstantinidis KT, Chee-Sanford JC, Sanford RA, Schadt CW, Loffler FE. 2016. Detection and diversity of fungal nitric oxide reductase genes (p450nor) in agricultural soils. Applied and Environmental Microbiology 82:2919-2928.
  8. Im J, Loffler FE. 2016. Fate of bisphenol A in terrestrial and aquatic environments. Environmental Science & Technology 50:8403-8416.
  9. Im J, Yip D, Lee J, Loffler FE. 2016. Simplified extraction of bisphenols from bacterial culture suspensions and solid matrices. Journal of Microbiological Methods 126:35-37.
  10. Kang JS, Bong J, Choi JS, Henry TB, Park JW. 2016. Differentially transcriptional regulation on cell cycle pathway by silver nanoparticles from ionic silver in larval zebrafish (Danio rerio). Biochemical and Biophysical Research Communications 479:753-758.
  11. Kleindienst S, Higgins SA, Tsementzi D, Konstantinidis KT, Mack EE, Loffler FE. 2016. Draft genome sequence of a strictly anaerobic dichloromethane-degrading bacterium. Microbiology Resource Announcements 4.
  12. Kuncova G, Ishizaki T, Solovyev A, Trogl J, Ripp S. 2016. The repetitive detection of toluene with bioluminescence bioreporter Pseudomonas putida TVA8 encapsulated in silica hydrogel on an optical fiber. Materials 9:e467 doi 10.3390/ma9060467.
  13. Lee J, Im J, Kim U, Loffler FE. 2016. A data mining approach to predict in situ detoxification potential of chlorinated ethenes. Environmental Science & Technology 50:5181-5188.
  14. Lee J, Lee J, Shukla SK, Park J, Lee TK. 2016. Effect of algal inoculation on COD and nitrogen removal, and indigenous bacterial dynamics in municipal wastewater. Journal of Microbiology and Biotechnology 26:900-908.
  15. Lee J, Lee TK. 2016. Development and characterization of PCE-to-ethene dechlorinating microcosms with contaminated river sediment. Journal of Microbiology and Biotechnology 26:120-129.
  16. Paradis CJ, Jagadamma S, Watson DB, McKay LD, Hazen TC, Park M, Istok JD. 2016. In situ mobility of uranium in the presence of nitrate following sulfate-reducing conditions. Journal of Contaminant Hydrology 187:55-64.
  17. Rivkina E, Petrovskaya L, Vishnivetskaya T, Krivushin K, Shmakova L, Tutukina M, Meyers A, Kondrashov F. 2016. Metagenomic analyses of the late Pleistocene permafrost – additional tools for reconstruction of environmental conditions. Biogeosciences 13:2207-2219.
  18. Rocha AM, Yuan Q, Close DM, O’Dell KB, Fortney JL, Wu JN, Hazen TC. 2016. Rapid detection of microbial cell abundance in aquatic systems. Biosensors & Bioelectronics 85:915-923.
  19. Soltanian MR, Amooie MA, Cole DR, Graham DE, Hosseini SA, Hovorka S, Pfiffner SM, Phelps TJ, Moortgat J. 2016. Simulating the Cranfield geological carbon sequestration project with high-resolution static models and an accurate equation of state. International Journal of Greenhouse Gas Control, 54:282-296. doi: 10.1016/j.ijggc.2016.10.002.
  20. Stackhouse B, Lau MCY, Vishnivetskaya T, Burton N, Wang R, Southworth A, Whyte L, Onstott TC. 2016. Atmospheric CH4 oxidation by Arctic permafrost and mineral cryosols as a function of water saturation and temperature. Geobiology 10.1111/gbi.12193:n/a-n/a.
  21. Stallard MA, Otter RR, Winesett S, Barbero M, Bruce M, Layton A, Bailey FC. A watershed analysis of seasonal concentration- and loading-based results for Escherichia coli in inland waters. Bulletin of Environmental Contamination and Toxicology 97:838-842.
  22. Tang SQ, Wang PH, Higgins SA, Loffler FE, Edwards EA. 2016. Sister Dehalobacter genomes reveal specialization in organohalide respiration and recent strain differentiation likely driven by chlorinated substrates. Frontiers in Microbiology 7:doi 10.3389/fmicb.2016.00100.
  23. Techtmann SM, Fitzgerald KS, Stelling SC, Joyner DC, Uttukar SM, Harris AP, Alshibli NK, Brown SD, Hazen TC. 2016. Colwellia psychrerythraea strains from distant deep sea basins show adaptation to local conditions. Frontiers in Environmental Science 4.
  24. Vacchi FI, Von der Ohe PC, de Albuquerque AF, Vendemiatti JAD, Azevedo CCJ, Honorio JG, da Silva BF, Zanoni MVB, Henry TB, Nogueira AJ, Umbuzeiro GD. 2016. Occurrence and risk assessment of an azo dye – The case of Disperse Red 1. Chemosphere 156:95-100.
  25. Xu T, Conway MK, Frank A, Brumbaugh A, Ripp S, Close D. 2016. Autobioluminescent cellular models for enhanced drug discovery. In Chen T, Chai SC (ed.), Special Topics in Drug Discovery, e52249, Intech Publishers, Rijeka, Croatia.
  26. Xu T, Marr E, Handagama W, Close D, Sayler G, Ripp S. 2016. The expanding toolbox of in vivo bioluminescent imaging. Frontiers in Oncology 6:doi 10.3389/fonc.2016.00150.
  27. Yan J, Simsir B, Farmer AT, Bi M, Yang Y, Campagna SR, Loffler FE. 2016. The corrinoid cofactor of reductive dehalogenases affects dechlorination rates and extents in organohalide-respiring Dehalococcoides mccartyi. ISME Journal 10:1092-1101.
  28. Yoon S, Nissen S, Park D, Sanford RA, Loffler FE. 2016. Nitrous oxide reduction kinetics distinguish bacteria harboring clade I nosZ from those harboring clade II nosZ. Applied and Environmental Microbiology 82:3793-3800.
  29. Yu XM, Wang ZW, Lynn A, Cai JC, Huangfu YC, Geng Y, Tang JX, Zeng XF. 2016. Heavy metals in wheat grown in sewage irrigation: A distribution and prediction model. Polish Journal of Environmental Studies 25:413-418.